Nematoda, Tardigrada, Rotifera and Crustacea composition in different freshwater habitats on Spitsbergen (Arctic) and King George Island (Antarctic) was presented. In all surveyed groups more genera and species were recorded from Spitsbergen than from King George Island. Habitats richest in taxa were moss banks and thaw ponds, whereas streams were poorest in species. In all groups in both regions cosmopolitan species dominated, but higher number of endemic species was recorded on King George Island. Regarding species composition in surveyed groups it can be suggested that freshwater habitats on Spitsbergen are more similar to each other than those on King George Island.